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BatatasLM-Hainan1393-Annotations

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train · 3.45k rows

sequence_id stringlengths 41 41	original_sequence_id stringlengths 15 15	length_bp int64 16.4k 40.4M
Ipomoea_batatas_HAINAN1393_GWHEQIG_000001	GWHEQIG00000001	39,604,232
Ipomoea_batatas_HAINAN1393_GWHEQIG_000002	GWHEQIG00000002	38,169,280
Ipomoea_batatas_HAINAN1393_GWHEQIG_000003	GWHEQIG00000003	39,942,016
Ipomoea_batatas_HAINAN1393_GWHEQIG_000004	GWHEQIG00000004	34,259,292
Ipomoea_batatas_HAINAN1393_GWHEQIG_000005	GWHEQIG00000005	27,888,432
Ipomoea_batatas_HAINAN1393_GWHEQIG_000006	GWHEQIG00000006	30,885,279
Ipomoea_batatas_HAINAN1393_GWHEQIG_000007	GWHEQIG00000007	35,978,309
Ipomoea_batatas_HAINAN1393_GWHEQIG_000008	GWHEQIG00000008	35,576,970
Ipomoea_batatas_HAINAN1393_GWHEQIG_000009	GWHEQIG00000009	27,132,034
Ipomoea_batatas_HAINAN1393_GWHEQIG_000010	GWHEQIG00000010	34,274,266
Ipomoea_batatas_HAINAN1393_GWHEQIG_000011	GWHEQIG00000011	22,846,779
Ipomoea_batatas_HAINAN1393_GWHEQIG_000012	GWHEQIG00000012	31,916,441
Ipomoea_batatas_HAINAN1393_GWHEQIG_000013	GWHEQIG00000013	32,532,811
Ipomoea_batatas_HAINAN1393_GWHEQIG_000014	GWHEQIG00000014	34,312,120
Ipomoea_batatas_HAINAN1393_GWHEQIG_000015	GWHEQIG00000015	34,907,559
Ipomoea_batatas_HAINAN1393_GWHEQIG_000016	GWHEQIG00000016	38,738,212
Ipomoea_batatas_HAINAN1393_GWHEQIG_000017	GWHEQIG00000017	33,755,827
Ipomoea_batatas_HAINAN1393_GWHEQIG_000018	GWHEQIG00000018	34,157,960
Ipomoea_batatas_HAINAN1393_GWHEQIG_000019	GWHEQIG00000019	37,316,821
Ipomoea_batatas_HAINAN1393_GWHEQIG_000020	GWHEQIG00000020	39,180,508
Ipomoea_batatas_HAINAN1393_GWHEQIG_000021	GWHEQIG00000021	40,351,435
Ipomoea_batatas_HAINAN1393_GWHEQIG_000022	GWHEQIG00000022	40,032,125
Ipomoea_batatas_HAINAN1393_GWHEQIG_000023	GWHEQIG00000023	35,604,043
Ipomoea_batatas_HAINAN1393_GWHEQIG_000024	GWHEQIG00000024	39,380,544
Ipomoea_batatas_HAINAN1393_GWHEQIG_000025	GWHEQIG00000025	31,724,660
Ipomoea_batatas_HAINAN1393_GWHEQIG_000026	GWHEQIG00000026	30,125,960
Ipomoea_batatas_HAINAN1393_GWHEQIG_000027	GWHEQIG00000027	26,763,028
Ipomoea_batatas_HAINAN1393_GWHEQIG_000028	GWHEQIG00000028	29,158,458
Ipomoea_batatas_HAINAN1393_GWHEQIG_000029	GWHEQIG00000029	29,694,604
Ipomoea_batatas_HAINAN1393_GWHEQIG_000030	GWHEQIG00000030	28,584,529
Ipomoea_batatas_HAINAN1393_GWHEQIG_000031	GWHEQIG00000031	35,189,687
Ipomoea_batatas_HAINAN1393_GWHEQIG_000032	GWHEQIG00000032	36,146,265
Ipomoea_batatas_HAINAN1393_GWHEQIG_000033	GWHEQIG00000033	31,035,659
Ipomoea_batatas_HAINAN1393_GWHEQIG_000034	GWHEQIG00000034	31,133,955
Ipomoea_batatas_HAINAN1393_GWHEQIG_000035	GWHEQIG00000035	29,654,813
Ipomoea_batatas_HAINAN1393_GWHEQIG_000036	GWHEQIG00000036	27,750,642
Ipomoea_batatas_HAINAN1393_GWHEQIG_000037	GWHEQIG00000037	30,266,281
Ipomoea_batatas_HAINAN1393_GWHEQIG_000038	GWHEQIG00000038	27,735,519
Ipomoea_batatas_HAINAN1393_GWHEQIG_000039	GWHEQIG00000039	28,498,369
Ipomoea_batatas_HAINAN1393_GWHEQIG_000040	GWHEQIG00000040	27,636,823
Ipomoea_batatas_HAINAN1393_GWHEQIG_000041	GWHEQIG00000041	29,219,552
Ipomoea_batatas_HAINAN1393_GWHEQIG_000042	GWHEQIG00000042	27,005,121
Ipomoea_batatas_HAINAN1393_GWHEQIG_000043	GWHEQIG00000043	27,187,026
Ipomoea_batatas_HAINAN1393_GWHEQIG_000044	GWHEQIG00000044	23,035,271
Ipomoea_batatas_HAINAN1393_GWHEQIG_000045	GWHEQIG00000045	22,332,047
Ipomoea_batatas_HAINAN1393_GWHEQIG_000046	GWHEQIG00000046	24,719,380
Ipomoea_batatas_HAINAN1393_GWHEQIG_000047	GWHEQIG00000047	20,950,050
Ipomoea_batatas_HAINAN1393_GWHEQIG_000048	GWHEQIG00000048	23,673,323
Ipomoea_batatas_HAINAN1393_GWHEQIG_000049	GWHEQIG00000049	28,441,793
Ipomoea_batatas_HAINAN1393_GWHEQIG_000050	GWHEQIG00000050	29,911,043
Ipomoea_batatas_HAINAN1393_GWHEQIG_000051	GWHEQIG00000051	33,955,321
Ipomoea_batatas_HAINAN1393_GWHEQIG_000052	GWHEQIG00000052	33,689,588
Ipomoea_batatas_HAINAN1393_GWHEQIG_000053	GWHEQIG00000053	31,334,217
Ipomoea_batatas_HAINAN1393_GWHEQIG_000054	GWHEQIG00000054	29,190,912
Ipomoea_batatas_HAINAN1393_GWHEQIG_000055	GWHEQIG00000055	33,667,239
Ipomoea_batatas_HAINAN1393_GWHEQIG_000056	GWHEQIG00000056	29,454,339
Ipomoea_batatas_HAINAN1393_GWHEQIG_000057	GWHEQIG00000057	34,837,761
Ipomoea_batatas_HAINAN1393_GWHEQIG_000058	GWHEQIG00000058	31,136,263
Ipomoea_batatas_HAINAN1393_GWHEQIG_000059	GWHEQIG00000059	22,765,844
Ipomoea_batatas_HAINAN1393_GWHEQIG_000060	GWHEQIG00000060	20,462,834
Ipomoea_batatas_HAINAN1393_GWHEQIG_000061	GWHEQIG00000061	26,389,857
Ipomoea_batatas_HAINAN1393_GWHEQIG_000062	GWHEQIG00000062	20,223,869
Ipomoea_batatas_HAINAN1393_GWHEQIG_000063	GWHEQIG00000063	25,007,701
Ipomoea_batatas_HAINAN1393_GWHEQIG_000064	GWHEQIG00000064	21,703,555
Ipomoea_batatas_HAINAN1393_GWHEQIG_000065	GWHEQIG00000065	26,002,470
Ipomoea_batatas_HAINAN1393_GWHEQIG_000066	GWHEQIG00000066	20,345,616
Ipomoea_batatas_HAINAN1393_GWHEQIG_000067	GWHEQIG00000067	27,018,685
Ipomoea_batatas_HAINAN1393_GWHEQIG_000068	GWHEQIG00000068	28,229,716
Ipomoea_batatas_HAINAN1393_GWHEQIG_000069	GWHEQIG00000069	27,720,786
Ipomoea_batatas_HAINAN1393_GWHEQIG_000070	GWHEQIG00000070	28,432,235
Ipomoea_batatas_HAINAN1393_GWHEQIG_000071	GWHEQIG00000071	21,207,621
Ipomoea_batatas_HAINAN1393_GWHEQIG_000072	GWHEQIG00000072	24,973,978
Ipomoea_batatas_HAINAN1393_GWHEQIG_000073	GWHEQIG00000073	27,931,942
Ipomoea_batatas_HAINAN1393_GWHEQIG_000074	GWHEQIG00000074	28,777,201
Ipomoea_batatas_HAINAN1393_GWHEQIG_000075	GWHEQIG00000075	26,730,590
Ipomoea_batatas_HAINAN1393_GWHEQIG_000076	GWHEQIG00000076	25,679,964
Ipomoea_batatas_HAINAN1393_GWHEQIG_000077	GWHEQIG00000077	26,029,776
Ipomoea_batatas_HAINAN1393_GWHEQIG_000078	GWHEQIG00000078	20,647,425
Ipomoea_batatas_HAINAN1393_GWHEQIG_000079	GWHEQIG00000079	27,174,557
Ipomoea_batatas_HAINAN1393_GWHEQIG_000080	GWHEQIG00000080	25,507,647
Ipomoea_batatas_HAINAN1393_GWHEQIG_000081	GWHEQIG00000081	27,503,117
Ipomoea_batatas_HAINAN1393_GWHEQIG_000082	GWHEQIG00000082	27,829,905
Ipomoea_batatas_HAINAN1393_GWHEQIG_000083	GWHEQIG00000083	27,153,404
Ipomoea_batatas_HAINAN1393_GWHEQIG_000084	GWHEQIG00000084	25,238,027
Ipomoea_batatas_HAINAN1393_GWHEQIG_000085	GWHEQIG00000085	27,514,871
Ipomoea_batatas_HAINAN1393_GWHEQIG_000086	GWHEQIG00000086	29,827,239
Ipomoea_batatas_HAINAN1393_GWHEQIG_000087	GWHEQIG00000087	28,255,657
Ipomoea_batatas_HAINAN1393_GWHEQIG_000088	GWHEQIG00000088	30,284,012
Ipomoea_batatas_HAINAN1393_GWHEQIG_000089	GWHEQIG00000089	29,449,999
Ipomoea_batatas_HAINAN1393_GWHEQIG_000090	GWHEQIG00000090	24,540,494
Ipomoea_batatas_HAINAN1393_GWHEQIG_000091	GWHEQIG00000091	35,337
Ipomoea_batatas_HAINAN1393_GWHEQIG_000092	GWHEQIG00000092	64,977
Ipomoea_batatas_HAINAN1393_GWHEQIG_000093	GWHEQIG00000093	35,008
Ipomoea_batatas_HAINAN1393_GWHEQIG_000094	GWHEQIG00000094	31,966
Ipomoea_batatas_HAINAN1393_GWHEQIG_000095	GWHEQIG00000095	27,201
Ipomoea_batatas_HAINAN1393_GWHEQIG_000096	GWHEQIG00000096	31,628
Ipomoea_batatas_HAINAN1393_GWHEQIG_000097	GWHEQIG00000097	47,694
Ipomoea_batatas_HAINAN1393_GWHEQIG_000098	GWHEQIG00000098	43,360
Ipomoea_batatas_HAINAN1393_GWHEQIG_000099	GWHEQIG00000099	31,528
Ipomoea_batatas_HAINAN1393_GWHEQIG_000100	GWHEQIG00000100	32,669

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Check out the documentation for more information.

Hainan1393 Coding Annotation

Predicted coding regions and associated genomic features for Ipomoea batatas cultivar Hainan1393, generated using BatatasLM and XGBoost.

Files

Hainan1393.coding_annotation.gff3: predicted coding regions, CDS segments, start and stop codons, introns, and splice sites in GFF3 format.
sequence_ids.tsv: sequence identifier information.

Note

These annotations are computational predictions and should be used with the corresponding Hainan1393 genome assembly.

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