docs: add gitignore

.gitignore

@@ -8,4 +8,5 @@ venv/
 .DS_Store
 
 .agents
-.uvicorn.log
+.uvicorn.log
+PUSH_INSTRUCTION.md

PUSH_INSTRUCTIONS.md

@@ -1,125 +0,0 @@
-# Push Instructions — Musubi
-
-Workflow GitHub-first ke Hugging Face Space. Pilih satu opsi sync (manual atau auto via GitHub Actions).
-
-> Final QA checklist ada di bagian akhir file ini.
-
----
-
-## Section A — Setup GitHub (wajib)
-
-```bash
-git init
-git add .
-git commit -m "Initial commit: Musubi v1.0"
-```
-
-Buat repo baru di <https://github.com/new>:
-- Repository name: `musubi`
-- Visibility: **public**
-- **Jangan** tambahkan README / .gitignore / license (sudah ada di local)
-
-```bash
-git remote add origin https://github.com/<username>/musubi.git
-git branch -M main
-git push -u origin main
-```
-
----
-
-## Section B — Setup Hugging Face Space
-
-1. Buat Space baru di <https://huggingface.co/new-space>:
-   - Owner: `lumicero`
-   - Space name: `musubi`
-   - SDK: **Docker**
-   - Hardware: **CPU basic** (free)
-   - Visibility: **public**
-2. Buka tab **Settings → Variables and secrets**.
-3. Tambahkan secret `ENTREZ_EMAIL` dengan value email kamu (dipakai oleh NCBI Entrez API).
-
----
-
-## Section C — Opsi 1: Dual remote (manual sync)
-
-Cocok kalau update jarang. Push sekali ke GitHub, push sekali ke HF Space.
-
-```bash
-git remote add space https://huggingface.co/spaces/lumicero/musubi
-git push space main
-```
-
-Untuk update berikutnya:
-
-```bash
-git push origin main && git push space main
-```
-
-> Catatan: butuh **HF access token** kalau Space private (atau di-block oleh password prompt). Generate di <https://huggingface.co/settings/tokens> (scope **Write**) dan pakai sebagai password saat push pertama. Username adalah HF username.
-
----
-
-## Section C — Opsi 2: GitHub Actions auto-sync (recommended)
-
-Cocok kalau update sering. Setiap push ke `main` GitHub auto-sync ke HF Space dalam ~30 detik.
-
-1. Buat file `.github/workflows/sync-to-hf-space.yml`:
-
-   ```yaml
-   name: Sync to Hugging Face Space
-   on:
-     push:
-       branches: [main]
-     workflow_dispatch:
-   jobs:
-     sync:
-       runs-on: ubuntu-latest
-       steps:
-         - uses: actions/checkout@v4
-           with:
-             fetch-depth: 0
-             lfs: true
-         - name: Push to HF Space
-           env:
-             HF_TOKEN: ${{ secrets.HF_TOKEN }}
-           run: |
-             git push --force https://lumicero:$HF_TOKEN@huggingface.co/spaces/lumicero/musubi main
-   ```
-
-2. Buat HF access token (**Write** scope) di <https://huggingface.co/settings/tokens>.
-3. Di GitHub repo: **Settings → Secrets and variables → Actions → New repository secret**. Tambah `HF_TOKEN` dengan value token tersebut.
-4. **Push manual pertama tetap perlu** (pakai Opsi 1) supaya Space tahu branch `main`-nya. Setelah itu Actions take over.
-
----
-
-## Section D — Verifikasi
-
-1. Buka URL Space: <https://huggingface.co/spaces/lumicero/musubi>
-2. Tunggu build selesai (5–10 menit pertama; rebuild lebih cepat).
-3. Cek **Logs** kalau ada error build.
-4. Tes UI di browser: paste sample abstract, klik Analyze, eksplor graph.
-
----
-
-## Final QA checklist
-
-Jalankan sebelum push pertama ke HF Space. Cek lokal dulu:
-
-```bash
-docker build -t musubi .
-docker run -p 7860:7860 -e ENTREZ_EMAIL=test@example.com musubi
-```
-
-Buka <http://localhost:7860> dan verifikasi:
-
-- [ ] `/health` responds 200 dengan `model_loaded: true`
-- [ ] `/analyze` dengan 1 abstract returns valid graph
-- [ ] `/analyze` dengan 5 abstract returns valid graph dalam < 30 detik
-- [ ] `/pubmed-search` returns abstracts (dengan `ENTREZ_EMAIL` di-set)
-- [ ] Graph node click highlights neighbors
-- [ ] Edge click opens evidence panel
-- [ ] Confidence slider re-triggers analyze (debounced)
-- [ ] Pair-type filter updates graph instantly (tanpa re-fetch)
-- [ ] Granularity toggle re-triggers analyze
-- [ ] No console errors di browser
-- [ ] Dark theme konsisten di semua component